ABCC7 p.Phe1099Leu
| CF databases: |
c.3297C>A
,
p.Phe1099Leu
(CFTR1)
?
,
|
| Predicted by SNAP2: | A: D (59%), C: N (57%), D: D (91%), E: D (85%), G: D (85%), H: D (85%), I: D (53%), K: D (85%), L: N (66%), M: N (53%), N: D (85%), P: D (85%), Q: D (75%), R: D (85%), S: D (75%), T: D (66%), V: D (59%), W: D (85%), Y: D (63%), |
| Predicted by PROVEAN: | A: N, C: N, D: D, E: D, G: D, H: D, I: N, K: D, L: N, M: N, N: D, P: D, Q: D, R: D, S: D, T: N, V: N, W: N, Y: N, |
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[hide] Extensive sequencing of the CFTR gene: lessons lea... Hum Genet. 2005 Dec;118(3-4):331-8. Epub 2005 Sep 28. McGinniss MJ, Chen C, Redman JB, Buller A, Quan F, Peng M, Giusti R, Hantash FM, Huang D, Sun W, Strom CM
Extensive sequencing of the CFTR gene: lessons learned from the first 157 patient samples.
Hum Genet. 2005 Dec;118(3-4):331-8. Epub 2005 Sep 28., [PMID:16189704]
Abstract [show]
Cystic fibrosis (CF) is one of the most common monogenic diseases affecting Caucasians and has an incidence of approximately 1:3,300 births. Currently recommended screening panels for mutations in the responsible gene (CF transmembrane regulator gene, CFTR) do not detect all disease-associated mutations. Our laboratory offers extensive sequencing of the CFTR (ABCC7) gene (including the promoter, all exons and splice junction sites, and regions of selected introns) as a clinical test to detect mutations which are not found with conventional screening. The objective of this report is to summarize the findings of extensive CFTR sequencing from our first 157 consecutive patient samples. In most patients with classic CF symptoms (18/24, 75%), extensive CFTR sequencing confirmed the diagnosis by finding two disease-associated mutations. In contrast, only 5 of 75 (7%) patients with atypical CF had been identified with two CFTR mutations. A diagnosis of CF was confirmed in 10 of 17 (58%) newborns with either positive sweat chloride readings or positive immunoreactive trypsinogen (IRT) screen results. We ascertained ten novel sequence variants that are potentially disease-associated: two deletions (c.1641AG>T, c.2949_2853delTACTC), seven missense mutations (p.S158T, p.G451V, p.K481E, p.C491S, p.H949L, p.T1036N, p.F1099L), and one complex allele ([p.356_A357del; p.358I]). We ascertained three other apparently novel complex alleles. Finally, several patients were found to carry partial CFTR gene deletions. In summary, extensive CFTR gene sequencing can detect rare mutations which are not found with other screening and diagnostic tests, and can thus establish a definitive diagnosis in symptomatic patients with previously negative results. This enables carrier detection and prenatal diagnosis in additional family members.
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No. Sentence Comment
7 We ascertained ten novel sequence variants that are potentially disease-associated: two deletions (c.1641AG>T, c.2949_2853delTACTC), seven missense mutations (p.S158T, p.G451V, p.K481E, p.C491S, p.H949L, p.T1036N, p.F1099L), and one complex allele ([p.356_A357del; p.358I]).
X
ABCC7 p.Phe1099Leu 16189704:7:216
status: NEW67 Two novel and apparently disease-associated sequence variants were identified and are discussed below in detail (c.2949_2953 delTACTC and p.F1099L).
X
ABCC7 p.Phe1099Leu 16189704:67:140
status: NEW81 Of the seven novel missense mutations ascertained, we expect that three (p.G451V, p.T1036N, and p.F1099L) are disease-associated mutations.
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ABCC7 p.Phe1099Leu 16189704:81:98
status: NEW82 Two of these missense mutations (p.G451V, p.F1099L) were found in patients with a clinical diagnosis of CF and carrying the Delta F508 mutation on the other allele.
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ABCC7 p.Phe1099Leu 16189704:82:44
status: NEW